Index

A

annotate_with_sum() (in module got.taxonomies.pargenfs)

AST (class in got.asts.base) (in module got.asts.ast)

D

draw_lifting_tree() (in module got.taxonomies.visualize)

draw_raw_tree() (in module got.taxonomies.visualize)

E

EASA (class in got.asts.ast) EastException EmptyStringsCollectionException

ensure_np_matrix() (in module got.relevance_analysis.faddis) enumerate_tree_layers() (in module got.taxonomies.pargenfs) EnumMixin (class in got.asts.utils) extract_leaves() (in module got.taxonomies.taxonomy)

F

faddis() (in module got.relevance_analysis.faddis)

format_message() (got.asts.exceptions.EastException method)

G

get_ast() (got.asts.base.AST static method) get_cluster_k() (in module got.taxonomies.pargenfs) get_index_and_name() (got.taxonomies.taxonomy.Taxonomy static method) get_taxonomy_tree() (got.taxonomies.taxonomy.Taxonomy method) got (module) got.asts (module) got.asts.ast (module) got.asts.base (module) got.asts.consts (module)

got.asts.exceptions (module) got.asts.utils (module) got.relevance_analysis (module) got.relevance_analysis.faddis (module) got.relevance_analysis.lapin (module) got.taxonomies (module) got.taxonomies.ete3_functions (module) got.taxonomies.pargenfs (module) got.taxonomies.taxonomy (module) got.taxonomies.visualize (module)

I

ImmutableMixin (class in got.asts.utils) import_modules_from_package() (in module got.asts.utils) index() (in module got.asts.utils) indicate_offshoots() (in module got.taxonomies.pargenfs)

is_internal (got.taxonomies.taxonomy.Node attribute) is_leaf (got.taxonomies.taxonomy.Node attribute) is_root (got.taxonomies.taxonomy.Node attribute) itersubclasses() (in module got.asts.utils)

L

lapin() (in module got.relevance_analysis.lapin) layout_lift() (in module got.taxonomies.visualize)

layout_raw() (in module got.taxonomies.visualize) leaves (got.taxonomies.taxonomy.Taxonomy attribute)

M

make_ete3_lifted() (in module got.taxonomies.ete3_functions) make_ete3_raw() (in module got.taxonomies.ete3_functions) make_init_step() (in module got.taxonomies.pargenfs) make_recursive_step() (in module got.taxonomies.pargenfs) make_result_table() (in module got.taxonomies.pargenfs)

make_unique_endings() (in module got.asts.utils) match_strings() (in module got.asts.utils) msg_fmt (got.asts.exceptions.EastException attribute) (got.asts.exceptions.EmptyStringsCollectionException attribute) (got.asts.exceptions.NoSuchASTAlgorithm attribute) (got.asts.exceptions.NotFoundException attribute)

N

Node (class in got.taxonomies.taxonomy) normalize_and_return_leaf_weights() (in module got.taxonomies.pargenfs)

NoSuchASTAlgorithm NotFoundException

P

pargenfs() (in module got.taxonomies.pargenfs)

prune_tree() (in module got.taxonomies.pargenfs)

R

read_ete3_from_file() (in module got.taxonomies.visualize) reduce_edges() (in module got.taxonomies.pargenfs)

root (got.taxonomies.taxonomy.Taxonomy attribute) run() (in module got.taxonomies.pargenfs)

S

save_ete3() (in module got.taxonomies.ete3_functions) save_leaves() (in module got.taxonomies.taxonomy) save_result_table() (in module got.taxonomies.pargenfs) score() (got.asts.ast.EASA method) (got.asts.base.AST method)

set_gaps_for_tree() (in module got.taxonomies.pargenfs) set_internal_weights() (in module got.taxonomies.pargenfs) set_parameters() (in module got.taxonomies.pargenfs)

T

Taxonomy (class in got.taxonomies.taxonomy) tokenize() (in module got.asts.utils) traverse() (got.asts.base.AST method) traverse_breadth_first() (got.asts.ast.EASA method) (got.asts.base.AST method)

traverse_depth_first_post_order() (got.asts.ast.EASA method) (got.asts.base.AST method) traverse_depth_first_pre_order() (got.asts.ast.EASA method) (got.asts.base.AST method) truncate_weights() (in module got.taxonomies.pargenfs)